HTSeq: Analysing high-throughput sequencing data with PythonΒΆ
- Overview
- Prequisites and installation
- A tour through HTSeq
- A detailed use case: Transcription start sites
- Counting reads
- Reference overview
- Sequences and FASTA/FASTQ files
- Genomic intervals and genomic arrays
- Read alignments
- Features
- Other parsers
- Miscellaneous
- Quality Assessment with
htseq-qa
- Counting reads in features with
htseq-count
- Version history
- Next version (current master)
- Version 0.13.5
- Version 0.12.4
- Version 0.12.3
- Version 0.11.4
- Version 0.11.3
- Version 0.11.2
- Version 0.11.1
- Version 0.11.0
- Version 0.10.0
- Version 0.9.1
- Version 0.9.0
- Version 0.8.0
- Version 0.7.2
- Version 0.7.1
- Version 0.7.0
- Version 0.6.1
- Version 0.6.0
- Version 0.5.4
- Version 0.5.3
- Version 0.5.2
- Version 0.5.1
- Version 0.5.0
- Version 0.4.7
- Version 0.4.6
- Version 0.4.5
- Version 0.4.4
- Version 0.4.3
- Version 0.4.2
- Version 0.4.1
- Version 0.4.0
- Version 0.3.7
- Notes for Contributors